CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthethic_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthethic_map [ View Map Set Info ]
Map Name: 6
Map Start: 0 bp
Map Stop: 31.25 bp
Features by Type:
236 Marker
59 QTL
295 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 295.       of 12 | Next
Rice - Synthethic_map - 6
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RG456 Marker 12.334 No other positions
B522B Marker 21.397 - 21.399 Maize - Physical_map_IBM2 - 9 B522B Marker 56.36 - 56.37 (bp) Automated name-based, Automated name-based View Maps
MID06024 Marker 30.821 No other positions
B538B Marker 25.499 - 25.502 Maize - Physical_map_IBM2 - 6 B538B Marker 98.08 (bp) Automated name-based, Automated name-based View Maps
B490E Marker 4.143 - 4.151 Maize - Physical_map_IBM2 - 6 B490E Marker 53.04 - 53.05 (bp) Automated name-based, Automated name-based View Maps
OsARF16 Marker 4.926 - 4.932 No other positions
B551E Marker 30.528 - 30.529 Maize - Physical_map_IBM2 - 5 B551E Marker 62.11 - 62.12 (bp) Automated name-based, Automated name-based View Maps
B506B Marker 8.645 - 8.647 Maize - Physical_map_IBM2 - 6 B506B Marker 117.64 (bp) Automated name-based, Automated name-based View Maps
B514E Marker 15.969 - 15.974 Maize - Physical_map_IBM2 - 9 B514E Marker 50.02 - 50.03 (bp) Automated name-based, Automated name-based View Maps
RG778 Marker 26.238 No other positions
B531B Marker 23.633 - 23.634 Maize - Physical_map_IBM2 - 9 B531B Marker 85.88 (bp) Automated name-based, Automated name-based View Maps
B483B Marker 1.91 - 1.913 Maize - Physical_map_IBM2 - 6 B483B Marker 67.8 - 67.82 (bp) Automated name-based, Automated name-based View Maps
B546E Marker 28.287 - 28.293 Maize - Physical_map_IBM2 - 5 B546E Marker 41.39 (bp) Automated name-based, Automated name-based View Maps
B498E Marker 6.441 - 6.446 Maize - Physical_map_IBM2 - 6 B498E Marker 112.53 - 112.54 (bp) Automated name-based, Automated name-based View Maps
RM587 Marker 2.292 No other positions
B506E Marker 8.786 - 8.788 Maize - Physical_map_IBM2 - 6 B506E Marker 116.93 - 116.94 (bp) Automated name-based, Automated name-based View Maps
CEN6 Marker 15.283 No other positions
B522E Marker 21.655 - 21.662 Maize - Physical_map_IBM2 - 9 B522E Marker 58.83 - 58.86 (bp) Automated name-based, Automated name-based View Maps
B475B Marker 0.131 - 0.138 Maize - Physical_map_IBM2 - 9 B475B Marker 29.17 - 29.18 (bp) Automated name-based, Automated name-based View Maps
B539E Marker 26.443 - 26.445 Maize - Physical_map_IBM2 - 9 B539E Marker 93.43 (bp) Automated name-based, Automated name-based View Maps
B491E Marker 4.41 - 4.411 Maize - Physical_map_IBM2 - 6 B491E Marker 107.53 (bp) Automated name-based, Automated name-based View Maps
"OsNIP2;2" Marker 6.648 - 6.653 No other positions
B555B Marker 30.664 - 30.665 Maize - Physical_map_IBM2 - 5 B555B Marker 62.11 (bp) Automated name-based, Automated name-based View Maps
B515E Marker 16.852 - 16.858 Maize - Physical_map_IBM2 - 9 B515E Marker 48.45 - 48.46 (bp) Automated name-based, Automated name-based View Maps
AAC_CTT10 Marker 26.411 No other positions